Iām hoping someone can answer for you more definitively. From memory, I remember seeing the same thing and thinking āhum, three wires at the endā. And then thinking perhaps the black is split somewhere in the harness to the latch and is shared. Also, since the third magenta wire matched the added wire in the new harness, I assumed this has to be ok. Does it work? I guess that is the ultimate answer.
I have not programmed mine. I just purchased all the goodies to program it and I havenāt received everything yet.